BioMinnie / DNAManipulations

General Python scripts involving biopython and regular expressions modules to find DNA motifs

DNAManipulations

General scripts. Typically Python, Perl, R or Bash.

Types of manipulations:

1. Find DNA motifs or genomic regions

2. Extract distances between motifs or genomic regions

3. String filtering

4. Count motifs or genomic regions within coordinates

5. Perform statistical analyses on data

6. Convert between different filetypes, usually genomic datatypes

7. Circularise de novo assembled genomes

8. Plot publication quality graphs