BioImage Archive

BioImage Archive's repositories

ai_training_course

Language:Jupyter Notebook8 30

pytorch_tutorial

pyTorch demo(s)

Language:Jupyter Notebook600

bia-binder

Continuous deployment for binderhub at the BioImageArchive

Language:HTMLMIT4 5 24

2020_training_course

Language:Jupyter Notebook2 30

bia-agent

BioImage Archive local submission assistant

Language:PythonApache-2.0200

bia-explorer

Python package for exploring BIA data

Language:Jupyter NotebookApache-2.0200

bia-integrator

Language:PythonApache-2.02 3 41

bia-converter

BioImage Archive conversion pipelining software

Language:PythonApache-2.0100

bia-images-masks-to-omezarr

Code for converting images and segmentation masks to OME-Zarr

Language:PythonCC0-1.01 40

bia-mifa-models

Language:PythonCC0-1.01 3 1

BIA-astro

Language:Astro030

bia-exporter

Language:PythonMIT030

ai_data

Language:Python000

bia-integrator-core

Language:PythonApache-2.0000

bia-integrator-data

BIA integrator data files

020

bia-integrator-tools

Tools (including CLI) for working with bia-integrator

Language:PythonApache-2.0000

bia-rembi-models

Language:PythonApache-2.0000

bia-training

BIA training materials

Language:Jupyter NotebookNOASSERTION03 1

bia-zarr-annotation

Annotate BIA images from Zarr metadata

Language:Python010

bioimagearchive_notebooks

Language:Python020

ebi_summer_school

000

embassy-rke2

Language:HCL000

ome2024-ngff-challenge

Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data

000

upptime

Site monitoring

Language:MarkdownMIT02 127