Jeroen Van Goey's repositories
hackathon_indabaX_2024
Data and starter notebooks for the locust breeding ground prediction hackaton
LLMs-from-scratch
Implementing a ChatGPT-like LLM in PyTorch from scratch, step by step
os-proteomics
View point in Open source in Proteomics
arxiv-frontpage
My personal frontpage app
Awesome-Denovo-Peptide-Sequencing
Paper collection about de novo peptide Sequening
bayesian-flow-networks
This is the official code release for Bayesian Flow Networks.
bioconda-recipes
Conda recipes for the bioconda channel.
datasets
🤗 The largest hub of ready-to-use datasets for ML models with fast, easy-to-use and efficient data manipulation tools
DDPD
Code for Paper "Think While You Generate: Discrete Diffusion with Planned Denoising"
Drop7Gym
Student Project: Openai Gym of Drop7
google-io-extended-cpt-2024
Repository for presentation: Infrastructure as Code: Developer's Secret Weapon at Google IO Extended Cape Town 2024
InstaGeo-E2E-Geospatial-ML
A python package for end-to-end geospatial machine learning using multispectral earth observation data such as NASA HLS.
maxtext
A simple, performant and scalable Jax LLM!
memento
Official Implementation of Memento
mkdocs-deploy-gh-pages
GitHub Action to deploy an MkDocs site to GitHub Pages
MSEntropy
Spectral entropy for mass spectrometry data.
orthrus_metaproteomics
Transformer-based de novo sequencing (Casanovo) + database searching with rescoring (Sage + Mokapot). For metaproteomics datasets
protein-sequence-bfn
Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
protkit
A Unified Approach to Protein Engineering
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Stoix
🏛️A research-friendly codebase for fast experimentation of single-agent reinforcement learning in JAX • End-to-End JAX RL
unyt
Handle, manipulate, and convert data with units in Python
z3alpha
Z3alpha: synthesizes efficient Z3 strategies tailored to your problem set! Repo for the IJCAI'24 paper: Layered and Staged Monte Carlo Tree Search for SMT Strategy Synthesis.