BioData Club (BioData-Club)

BioData Club

BioData-Club

Geek Repo

Location:Portland, OR

Home Page:https://biodata-club.github.io/

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BioData Club's repositories

BioData-Club.github.io

BioData Club website and project management

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githubPagesTutorial

Tutorial on Setting Up a Github Page

Friendly-Intro-to-R

Danielle and Lilly teach a v friendly intro to R and R Studio.

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dataDonutsJeffLeek

Repository for discussing How to be a modern scientist

logregression-workshop

In biomedical research we often wish to classify data into two or more groups (eg. healthy and diseased) based on a variety of measurement variables, but how do you determine if the model you’ve selected is good? In this BioData Club workshop instructor Crista Moreno will discuss the mathematics of logistic regression for binary classification modeling, and how to prevent the harms of overfitting with cross validation in R. Attendees will gain knowledge through hands-on exercises about the following concepts and data science skills. Logistic regression (logit function, probability, binary classification) Overfitting (adding parameters and high dimensional spaces) Cross validation Cross validation Error R (R markdown, R packages magrittr, dplyr, ggplot2, tidyr, corrplot, caret, rgl) Anyone with interest in building a classification model for biomedical data is encouraged to attend! Prior experience with R, Rstudio, and a basic knowledge of classification modeling (also mathematical functions) will be helpful, but is not a requirement.

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diy-documentation

A BioData Club Workshop on Markdown and Read the Docs.

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ghpages-rtd

The ReadTheDocs version of the BioData Club's GitHub Pages Tutorial

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latex-course

An interactive introduction to LaTeX using Overleaf.

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obo-tutorial

A tutorial on using Open Biological and Biomedical Ontologies (OBO) to create better biodata

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programming-fundamentals

Programming fundamentals lesson based on the Software Carpentry Programming with Python lesson.

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BioDataIntroDataVizSlides

Slides for Intro to Data Viz workshop

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data_storytelling_bdc

Data Storytelling Workshop for BioData Club

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gradual_shiny

Workshop introducing Shiny programming concepts

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introduction-git

marp slides and material for git talk

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jekyll-academic

Live GitHub Page at

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my-first-rtd

A sample repository for use in the BioData Club DIY Documentation Workshop

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nhanes_explore

Shiny App for Exploring the NHANES dataset

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TableauWorkshop

Repository for Tableau Workshop at OHSU

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webscraping_workshop

A Jupyter Notebook-based workshop on web scraping in python

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Workshop_ReproduciblePaper

A Practical Guide to Reproducible Papers

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