HIbrahim (Bio-Otto)

Bio-Otto

Geek Repo

Company:Marmara University/ Computational Biology and Bioinformatics Lab

Location:Göztepe/Kadıköy/İstanbul

Home Page:https://www.linkedin.com/in/halil-ibrahim-%C3%B6zdemir-951197b9/?locale=en_US

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HIbrahim's starred repositories

chemistry_drawer

Draw molecules with plotly!

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formulation_tasks

support for the formulation group in DP development

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formulation

Formulation prediction on potential active pharmaceutical ingredients

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bioservices

Access to Biological Web Services from Python.

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Pras_Server

Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by amide-amide interactions of the backbone

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MolVS

Molecule Validation and Standardization

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useful_rdkit_utils

Some useful RDKit functions

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Biostatistics

Basic Statistics for Biologist

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PyQtDarkTheme

A flat dark theme for PySide and PyQt.

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pdbe-api-training

Interactive Python notebooks for PDBe API training

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arpeggio

Calculation of interatomic interactions in molecular structures

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viamd

Visual Interactive Analysis of Molecular Dynamics

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TDC

Therapeutics Commons (TDC-2): Multimodal Foundation for Therapeutic Science

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chemometrics

Binder repo for chemometrics exercises

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ai4chem_course

EPFL CH-457 "AI for chemistry"

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OpenSourceMolecularModeling.github.io

Catalog of Open Source Molecular Modeling Projects

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qsar-tools

Scripts for assisting in modeling quantitative structure activity relationships from 2D chemical data

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openmm-cookbook

The OpenMM Cookbook and Tutorials

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glutamate

Simple PDB (protein) viewer

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SciencePlots

Matplotlib styles for scientific plotting

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multibind-publication-code

Repository for the code used in the multibind paper

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UpSetPlot

Draw UpSet plots with Matplotlib

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3D-Generative-SBDD

💊 A 3D Generative Model for Structure-Based Drug Design (NeurIPS 2021)

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