Bio-MingChen's repositories
VariantsVisulization
Plotting Variants(snv,indel,CNV,SV) called in Next Generation Sequencing(NGS)or Third Generation Sequencing
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-python
A curated list of awesome Python frameworks, libraries, software and resources
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Bio-MingChen
Config files for my GitHub profile.
bioinformatic_practices
Common exercises of bioinformatics mainly about Sequncing tech and data analysis
celltypist
A tool for semi-automatic cell type annotation
django_user_auth
customized django registration system
novoalgor
An innovative algorithmic for single-cell celltype assignment and visualization
scanpy_recipe
shortcut tools for scRNA-seq data analysis based on scanpy
single-cell-algor
Single cell sequencing data analysis algorithms exploration
single_cell_integration
Pipeline for single cell integration
Utilities
A lot of common and useful tools and functions
Awesome-Reproducible-Analysis-of-Single-Cell-Papers
A curated list of awesome reproducible papers in single-cell omics
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
howdoi
instant coding answers via the command line
infercnvpy
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
Linux_code_examples
Records of commonly and effectively Linux commands and scripts with active examples
myresume
My blog
py-googletrans
(unofficial) Googletrans: Free and Unlimited Google translate API for Python. Translates totally free of charge.
python_best_practice
Best practices when using python to basic usage,data science or web building
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
SingleCell-Workshop-2021
Module 4 for HKU Single-cell Workshop
somatic_calling
Scripts for Somatic variants Calling
TeachEnG
A Teaching Engine for Genomics
training-collection
Collection of bioinformatics training materials
Virgilio
Your new Mentor for Data Science E-Learning.