Alkan Lab for Bioinformatics and Computational Genomics

Alkan Lab for Bioinformatics and Computational Genomics's repositories

hercules

Profile HMM-based hybrid error correction algorithm for long reads

Language:C++BSD-3-Clause20 19 15

mrfast

micro-read Fast Alignment Search Tool

Language:CNOASSERTION20 19 1

tardis

Toolkit for automated and rapid discovery of structural variants

Language:CBSD-2-Clause20 11 14

GateKeeper

GateKeeper: Fast Alignment Filter for DNA Short Read Mapping

Language:VHDLGPL-3.017 7 2

valor

variation discovery using long range information in linked-reads

Language:CBSD-3-Clause16 21 12

mrcanavar

micro-read Copy Number Variant Regions finder

Language:CBSD-3-Clause10 150

MAGNET

MAGNET: Understanding and Improving the Accuracy of Genome Pre-Alignment Filtering

Language:MATLABBSD-3-Clause4 40

BilkentCompGen.github.io

Alkan Lab website

Language:SCSS3 190

GateKeeper-GPU

Pre-Alignment Filtering for Short Read Mapping in GPU

Language:C3 40

brifin

Language:PythonBSD-2-Clause1 40

repeatnet

RepeatNet: an ab initio centromeric sequence detection algorithm

Language:CBSD-3-Clause1 190

saber

Pattern matching tool to detect block rearrangement events in genomic sequences

Language:C++1 60

bibliography

030

drfast

dibase-read Fast Alignment Search Tool

Language:CBSD-3-Clause0200

lava

Language:C++BSD-3-Clause020 1

Linden

Language:C++050

mam

Multiple alignment Manipulator

Language:CBSD-3-Clause0130

sirfast

Language:CBSD-3-Clause0150

sonic-prebuilt

Prebuilt SONIC files for different genomes.

BSD-3-Clause0210