BigHat Biosciences's repositories
nanobody-polyreactivity
Nanobody polyreactivity
RFdiffusion
Code for running RFdiffusion
alphafold
Open source code for AlphaFold.
aws-codebuild-docker-images
Official AWS CodeBuild repository for managed Docker images http://docs.aws.amazon.com/codebuild/latest/userguide/build-env-ref.html
bh-DnaChisel
:pencil2: A versatile DNA sequence optimizer
branch-dispatch
Internal GitHub Actions
diffab
✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
gt4sd-core
GT4SD, an open-source library to accelerate hypothesis generation in the scientific discovery process.
IgFold
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
NanoNet
Fork of NanoNet for BH internal development
ProteinMPNN
Code for the ProteinMPNN paper
ProteinNPT
Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
regression-transformer
Regression Transformer (2023; Nature Machine Intelligence)
statsmodels
Statsmodels: statistical modeling and econometrics in Python
AbNumber
Convenience Python APIs for antibody numbering using ANARCI
ANARCI
Antibody Numbering and Antigen Receptor ClassIfication
bio.io
Javascript parser for biological formats
Fairseq
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
json-logging-python
Python logging library to emit JSON log that can be easily indexed and searchable by logging infrastructure such as ELK, EFK, AWS Cloudwatch, GCP Stackdriver
msa
Modular BioJS compoment for a multiple sequence alignment
seqviz
DNA sequence viewer supporting custom, GenBank, FASTA, NCBI accession, and iGEM input.
stat.seqs
A module to analyze multiple seqs