BenjaminSchwessinger's repositories
Introduction-to-BEAST2
This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.
FBD-tutorial
Dating Species Divergences with the Fossilized Birth-Death Process
seaborn_sinaplot
A python implementation of the sinaplot using matplotlib and seaborn
enrichment_seq
repo for enrichment sequencing data analysis
nanopolish
Signal-level algorithms for MinION data
pelita
Actor-based Toolkit for Interactive Language Education in Python
ASPP2018
Iterator, generators, toolz and streaming data in ASPP Asia Pacific 2018
testing_debugging_profiling
Material for the class "Testing, debugging, profiling -- Python tools for building software"
computel
Compute mean telomere length from Whole Genome Sequencing data.
Assemblytics
Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
Prior-selection
Prior selection and clock calibration using Influenza A data
pauvre
pauvre plotting software. originally designed for Oxford Nanopauvre data.
PacBio_QC
This is a first attempt on sharing scripts. Not perfect!
trimmomatic
Read trimming tool for Illumina NGS data.
2014-06-16-davis
Main repository for the Software Carpentry Workshop at UC Davis on June 16-17 2014
python_tools_on_github
Some useful bioinformatics / phylogenetics python code that I've written and sometimes even use