Rui Benfeitas's repositories
excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
2019-04-03-ttt-stockholm
The Carpentries Train the Trainer, 03-04 April, 2019, Stockholm, Sweden
Benfeitas.github.io
Code for personal repo
bioinformatics_resources
Useful bioinformatic resources
chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
clustergrammer-widget
The Clustergrammer interactive Jupyter notebook widget
harmonizome
Source code for the Harmonizome
HiC_tools
A collection of tools for Hi-C data analysis
ipypublish
A workflow for creating and editing publication ready scientific reports and presentations, from one or more Jupyter Notebooks, without leaving the browser!
mixOmics
Master and devel repo for mixOmics on BioC
phd2018
Repository for PhD Course 2018: Systems Biology of Human Metabolism and Gut Microbiome
Project_S3_new_rep
moved many files and foud it easier to make a new rep
python-ecology-lesson
:page_with_curl: Data Carpentry Python lessons on ecology.
TPMCalculator
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files