BenXZhang

RFdiffusion

Code for running RFdiffusion

RoseTTAFold-All-Atom

rf_diffusion_all_atom

Public RFDiffusionAA repo

AlphaFold3

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

MSCSF

The full package for the "multi-scale cardiac simulation framework" in C/C++

ProteinMPNN

Code for the ProteinMPNN paper

PyRosetta.notebooks

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

PMWebSpec

StanCon2023_brms_tutorial

Notebooks and data for StanCon2023 tutorial on BRMS

bridgestan

BridgeStan provides efficient in-memory access through Python, Julia, and R to the methods of a Stan model.

brms_stan

brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan

stan_gpt-tutorial

stancon_2023_tutorial_hieararchical_modeling

pytorch_notebooks

🔥 A collection of PyTorch notebooks for learning and practicing deep learning

Zhang-et-al-2022-3D-Human-Atrial-Model-with-Tubules

Zhang-et-al-2022-3D-Human-Atrial-Model-with-Tubules

PBPK_model_antibody_brain_uptake

VT_MAP_Project

pytorch_fnet

Three dimensional cross-modal image inference