BarryDigby

nf-pcgr

Time to learn DSL2

Cloud_CIX

Documentation for baby clouds

BarryDigby

bioconda-recipes

Conda recipes for the bioconda channel.

BMC-Genomics-review

BMC_circrna

nf-core BMC software article

branch_protection

circrna_finder

dockerfile for circRNA finder Westholm et al.

circRNA_finder-1

Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).

CIRIquant

circular RNA quantification tools

containers

Bioinformatics containers

CRT_workshop

dcc

dietrich et al, DCC tool....

epi_chap

find_circ

the lads

GSE118959

Analysis of GSE118959 circRNAs in LNCaP cell lines

healed

june13-22

MA5112

2023 MA5112

misc_scripts

Replaying the greatest hits..

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multi-package-containers

Testing building mulled containers for multi-requirement tools.

pca_network

Analysis of public & local PCa (circRNA, miRNA, mRNA) datasets

pycircdb

final hurdle

rnafusion

RNA-seq analysis pipeline for detection gene-fusions

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

smrnaseq

A small-RNA sequencing analysis pipeline

targetscan

TargetScan Container

TY_workshop

The return of foobar

zeppelin

Conference website