Shiladitya Banerjee's repositories
Energy_allocation_theory
Codes for: "Energy allocation theory for bacterial growth control in and out of steady state"
BSS2024
Course Materials for Boulder Summer School 2024
Excitable_Tissue
Vertex model for an excitable tissue
Actin_Length_Simulations
Gillespie simulations for actin filament nucleation and assembly
CellJunctionModel
Codes for theoretical modeling of epithelial junction dynamics
cell_competition_paper_models
Code for the models in the paper - Distinct modes of cell competition are governed by entropic and energetic properties of mixed cell populations
TractionModel2D
Continuum model for simulating cellular traction stress maps on 2D substrates.
HNP
Vertex Model simulations for Hindbrain Neuropore Gap Closure
CellReports2020
Bacterial growth and morphology data in Serbanescu et al, Cell Reports (2020).
TissueFluidityVM
A vertex model for active tissues, as featured in "Tissue fluidity promotes epithelial wound healing", Nature Physics (2019).