BIOP / qupath-extension-abba

QuPath extension for Aligning Big Brains and Atlases

QuPath ABBA extension

This repo adds some support for the ABBA plugin in QuPath.

Installing

You'll also need to install qupath-extension-warpy to access all functionalities of this extension. Download the latest qupath-extension-abba-[version].jar file from releases and drag it onto the main QuPath window.

If you haven't installed any extensions before, you'll be prompted to select a QuPath user directory. The extension will then be copied to a location inside that directory.

You might then need to restart QuPath (but not your computer).

Citing

TODO

Building

You can build the QuPath ABBA extension from source with

gradlew clean build

The output will be under build/libs.

• clean removes anything old
• build builds the QuPath extension as a .jar file and adds it to libs