BIOP / ijp-imagetoatlas

2D sections to 3D atlas registration with Fiji and QuPath

ABBA should be used with QuPath 0.4.4 or QuPath 0.5.x

Warning

ABBA should be used with QuPath 0.4.4 (or above). If you are using QuPath 0.4.0, 0.4.1, 0.4.2 or 0.4.3 you NEED TO UPDATE IT!

There was a bug that prevented to import some regions when splitting regions between left and

Aligning Big Brains & Atlases

ImageJ/Fiji plugin that align images with the Allen Brain Atlas within Fiji.

Documentation: https://abba-documentation.readthedocs.io

ABBA-Example.mp4