BIOP / bigdataviewer-biop-tools

Another repo for bdv tools.

BIOP/bigdataviewer-biop-tools Issues

In RegisterWholeSlideScans2DCommandm there are hardcoded parameter
Closed 8 months ago
Warpy: export registered sections broken
Updated 8 months ago1
Add smooth average in fuse and resample sources
Closed 8 months ago
Overflow with 16 bits value in fusion
Closed 9 months ago1
Warpy: make it batchable
Updated 9 months ago
Operetta command : check the alternate xml file name
Closed 10 months ago1
Warpy export broken
Closed 10 months ago1
BigStitcher - no overlap detected
Updated a year ago
Warpy: putting points for registration is super annoying on MAC
Updated a year ago
LLS7 opening and cropping
Updated a year ago
Cannot get current bdv view when time shifted sources are present
Closed 2 years ago1
Operetta opener do not sort by field and wells anymore
Closed 2 years ago1
z voxel size has an influence over the resolution level picked
Updated 2 years ago
add explicit resolution level in current bdv view to imageplus
Updated 2 years ago
Several enhancements for the UI
Closed 2 years ago1
Cannot get current bdv view when overlays are present
Closed 2 years ago
Z location not right in BigStitcher to OME TIFF exporter
Updated 2 years ago
Allow multi channel display on Warpy
Closed 2 years ago1
Rotation3DTransformCommand does not seem to do anything
Updated 2 years ago7
Fuse BigStitcher to OME-TIFF: Rounded numbers in GUI
Closed 2 years ago1
[Fuse a BigStitcher dataset to OME-Tiff] Figure Sampling Rate for XY Z and Ratio
Closed 2 years ago1
Fuse and resample does not take the good tiled downsampling (make this limit less all or nothing)
Closed 2 years ago1
Improve DemoEllipticalSource
Closed 2 years ago4
Elliposid transform axis names
Updated 3 years ago6
Make a script that starts bigStitcher from an operetta dataset
Closed 3 years ago1
Size of Elliptic Transform Source in MultiBox and Crash
Closed 3 years ago5
Ellipitic Transform Source display settings
Closed 3 years ago1
Ellipsoid Transform Rotate 90 degrees
Closed 3 years ago1
Ellipsoid Transform is registered twice
Closed 3 years ago1
Auto adjust view on elliposid transformed sources
Updated 3 years ago1
Ellipsoid transform names
Closed 3 years ago2
Export ImagePlus with more than one time point crashes
Closed 3 years ago20
Improve user messages in wizards
Closed 3 years ago
QuPath Wizard: be able to pan / zoom while placing landmarks.
Closed 3 years ago1
QuPath wizard : be able to modify a transformation a posteriori
Closed 3 years ago2
Multiple ImagePlus export : split by series and tiles
Closed 3 years ago1
Support reading pixel size for rotated image servers
Closed 3 years ago1
Timepoint slider bug?
Closed 3 years ago9
wrong comment?
Closed 3 years ago2
Makes a warning when erasing file
Closed 3 years ago
Ellipsoid Transform Singular Matrix Error
Closed 3 years ago5
Elliptic Transform parameter names
Closed 3 years ago1
Ellipsoid exported ImagePlus coordinates do not match BDV coordinates
Closed 3 years ago4
Load and save ellipsoid transforms
Closed 3 years ago4
Voxel size in elliptic transformed image
Updated 3 years ago4
Improvements
Updated 3 years ago1
Virtual slice not updating slice 1
Updated 3 years ago
QuPath error if two images with the same URI are imported
Closed 3 years ago1
Elliptic Transform is not registered
Closed 3 years ago1