BGSU RNA Bioinformatics's repositories
fr3d-python
Python implementation of the FR3D software for searching and annotating RNA 3D structures
RNA-3D-Hub-core
New resources for RNA Structural Bioinformatics: RNA 3D Motif Atlas, RNA Non-redundant Lists, RNA Structure Atlas (motif extraction and classification, database management)
RNA-Structure-utils
Some utilities for dealing with RNA structure
RNA-3D-Hub
Resources for RNA Structural Bioinformatics: RNA 3D Motif Atlas, RNA Non-redundant Lists, RNA Structure Atlas
alignment-server-dev
Development of "alignment server" in conjunction with the Gutell Lab at UT-Austin.
FR3D_history
This repository contains all archived versions of FR3D committed to one repository. Has only historical interest. Not maintained.
JAR3D-Website
JAR3D webserver for matching RNA loop sequences with RNA 3D motifs
UnitIdTranslation
Translate unit Ids from old to new formats
WebR3DAlign
Web application for locally optimized, nucleotide to nucleotide pairwise alignments of RNA 3D structures
3D-structure-coloring
Methods and data files to color RNA 3D structures
base-stacking-catalog
RNA Base-stacking Catalog
ConformationalChange
Matlab programs to detect local and large-scale conformational changes in RNA 3D structures
ribosome-functional-annotation
Python code for inferring ribosomal chain, tRNA occupancy, and bound protein factors/ligands
RNA-base-triples
Matlab code to model, find, and count RNA base triples
rna-protein-stacking
A place to put code for displaying RNA protein interaction data