BFL-lab / HMMsearchWC

HMMsearchWC

HMMsearchWrapper is a simple wrapper for hmmsearch 3.1b2 in order to create annotation for MFannot. HMMsearchCombiner is used to make selection of annotation (generated by HMMSearchWrapper) present in different files.

This package is based on activities of the OGMP (i.e, priori to 2002), and becomes open source as part of MFannot.

Install

In order to run RNAweasel you need:

1. Install HMMER on your system.
2. Install the PirObject library.
3. Install all the necessary PirModels.
4. Copy HMMsearchWrapper and HMMsearchCombiner in one of your executable directory (e.g: a directory list in $PATH).

Note: At this point the installation of HMMsearchWrapper and HMMsearchCombiner was only tested on Unix system (Ubuntu and CentOS).

Usage

In order to get the help page of HMMsearchWrapper you need to type HMMsearchWrapper -h in your terminal. In order to get the help page of HMMsearchCombiner you need to type HMMsearchCombiner -h in your terminal.

Contributing

Please see CONTRIBUTING and CONDUCT for details.

Credits

• All Contributors

License

GNU General Public License v3.0. Please see License File for more information.