JoseL's repositories
vsearch
Versatile open-source tool for microbiome analysis
picrust2
Code, unit tests, and tutorials for running PICRUSt2
ClaidentTutorial
Tutorial scripts and data for Claident
dada2
Accurate sample inference from amplicon data with single nucleotide resolution
biovcnet.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
MetabarcodingTextbook
A tutorial text for metabarcoding and DNA barcoding
microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
qiime2
Official repository for the QIIME 2 framework.
douc_gut_sites
Microbiome of red-shanked douc gut sites