Avsecz

kopt

Hyper-parameter optimization for Keras

concise

CONCISE (COnvolutional neural Networks for CIS-regulatory Elements)

nimnexus

command-line tools for processing ChIP-nexus data

gin-train

Tracking ML experiments using gin-config, wandb, comet.ml and S3.

fitbitr

fitbitr: An R Interface To The Fitbit API

DL-genomics-exercise

Jupyter notebooks for the system genetics lecture exercise 11 thought at TUM

dotemacs

My emacs configuation.

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

bioconda-recipes

Conda recipes for the bioconda channel.

cookiecutter

A command-line utility that creates projects from cookiecutters (project templates). E.g. Python package projects, jQuery plugin projects.

cookiecutter-pypackage

Cookiecutter template for a Python package.

cookiecutter-R-package

data-science-ipython-notebooks

Continually updated data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

DeepExplain

A unified framework of perturbation and gradient-based attribution methods for Deep Neural Networks interpretability

docker-tox-mongo

Extends the themattrix/docker-tox-base with mongodb 3.4

GenoGAM

hub

Submission to https://pytorch.org/hub/

kipoi_model_zoo_dx

example to run Deep Learning model to predict DNA sequence features with Kipoi with DNAnexus platform

Manuscript_Avsec_Bioinformatics_2017

Code for Avsec et al, Bioinformatics 2017

py-upset

A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.

pydoc-markdown

Create Python API documentation in Markdown format.

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

readme-template

README.md template for your open-source project

sacredboard

Dashboard for sacred

snakemake-profiles

test_repo

testlfs

tfmodisco

TF MOtif Discovery from Importance SCOres

topsacred

Small collection of useful functions/tools to work with sacred databases.

vision

Datasets, Transforms and Models specific to Computer Vision