Ashley Lab

deepbeat

DeepBeat: Multi-task deep learning for cardiac rhythm detection in wearable devices

stmp

Sequence to Medical Phenotypes: A pipeline featuring variant annotation, prioritization, pharmacogenomics, and tools for analyzing genomic trios (mother, father, child).

scotch

Scotch pipeline for indel calling.

ukbb

analysis code for UK Biobank dataset

myheartcounts

A collection of utilities, analytics for mobile health data

lvh-fusion

map_plots

plotting maps in R

MHC-Gait-Cluster

MHC Gait work on the Sherlock Cluster

stmp3

A third, more modest but less broken version of stmp

stmpVisualization2.0

Actual web based stmp visualization (runs in javascript)

mhc_data_parsers

data parsers for MyHeartCounts coreMotion, HealthKit, XML exports

charlie-cnvkit

scripts for running CNVkit in the UDN

CMSSupport

Drop-in Bridge-compatible CMS encryption implementation for use with AppCore.

device_validation

Device validation study analysis code

keras

Theano-based Deep Learning library (convnets, recurrent neural networks, and more).

metal

Metal meta indel caller.

mhc_activity_recommender

recommender system of activities for users in MHC 3.0 coaching studies

risk_scores

LD Pred risk scores for afib

RRest

Algorithms for estimation of respiratory rate from physiological signals

scotch-data-grch37

GRCh37 region feature data from Scotch indel caller.

scotch-data-grch38

GRCh38 region feature data for Scotch indel caller.

stmp4

Charlie continues Noah's stmp3.

stmpVisualization

visualization of stmp data and workflow aid