Ash1One / theClinicalKnowledgebase_spider

A samll spider for obtaining the available genes' variants of the Clinical Knowledgebase.

theClinicalKnowledgebase_spider

Two samll spider for obtaining the available genes' variants and gene level evidences of the Clinical Knowledgebase.

Running

• python gene_spider.py

• python gene_level_evidence_spider.py

Output

1. a json file named "gene_data.json" containing the basic variant information of available genes of the Clinical Knowledgebase.
2. a tsv file named "gene_level_evidence.tsv" containing gene level evidence for gene variant.

Requirements

• Python 3
• requests-html