J Arts's repositories
cPredictor
This repository defines a command-line tool predictor (cPredictor) based on single-cell RNA sequencing data.
GHA_docker_image
github actions docker image for repos
AnanseScanpy
Implementation of scANANSE for Scanpy objects in Python
IaC_os_server
Infrastructure as code (IaC) for conda and other tools
dash_plotly_QC_scRNA
Dash app to visualize scRNA-seq data quality control metrics from scanpy objects
cmaclp
This repository defines a cell meta-atlas (cma) command-line tool predictor (clp).
Arts-of-coding
Config files for my GitHub profile.
genomepy
genes and genomes at your fingertips
bioconda-recipes
Conda recipes for the bioconda channel.
corneal_meta_atlas
This repository contains the full processing workflow of the integration, analysis and machine learning model predictions used in the corneal meta-atlas study
ANANSE
Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples. http://anansepy.readthedocs.io
rs_cytoscape
Python automation tutorial for linking rsnumbers to genes and pathways
ipycytoscape
A Cytoscape Jupyter widget
rfessentials
rfessentials can be used for determining amino acids and corresponding basepairs from DNA sequences. The effect of these two in relation to indels and fusion proteins can also be determined (added later).
Nascent_RNA_quantification
Short FIJI macro's to analyze nascent RNAs at a transcription site in smFISH images