Arthur Rand's repositories
signalAlign
HMM-HDP models for MinION signal alignments
kafka-actix-example
Classic wordcount, updated with async/await!
CytosineMethylationAnalysis
Scripts and ipython notebooks for reproducing results from "Cytosine Methylation Variation Calling with MinION Nanopore Sequencing"
signalAlign_notebook
Notes and scripts for signalAlign
cPecan-signal
C + python code for pairwise multiple sequence alignment, pulling out this functionality from the Cactus alignment program adapted to align signal-level information from ONT MinION
HDP_models
signalAlign hierarchical Dirichlet process models
marginAlign
UCSC Nanopore
mesos-spark-integration-tests
Mesos Integration Tests on Docker/Ec2
noodles
Bioinformatics I/O libraries in Rust
rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
spoa-rs
A rust wrapper for the spoa C++ partial order alignment library
toil-marginAlign
Toil-based marginAlign and SignalAlign pipeline
toil-methylseq
Pipeline for WGBS data
toil-signalAlign
Toil scripts for signalAlign analysis of ONT data