Arkanosis / abi2csv

Base caller to convert electrophoregrams data in ABIF to nucleotide sequences in CSV

abi2csv

abi2csv is a base caller which converts electrophoregram raw data in the ABIF format to reusable sequences in CSV format.

Current Status

abi2csv is only at very first developement step, but it can already be used — just don't trust its output too much.

Compilation

Run poetry build in your working copy.

Usage

Usage: abi2csv <input.ab1> > output.csv

Arguments:
    input.ab1 raw electrophoregram data in the ABIF format

Contributing and reporting bugs

Contributions are welcome through GitHub pull requests.

Please report bugs and feature requests on GitHub issues.

License

abi2csv is copyright (C) 2020 Jérémie Roquet [e-mail] and licensed under the ISC license.