Antonie Vietor's starred repositories
Real-Time-Voice-Cloning
Clone a voice in 5 seconds to generate arbitrary speech in real-time
bfg-repo-cleaner
Removes large or troublesome blobs like git-filter-branch does, but faster. And written in Scala
gitlab-ci-pipelines-exporter
Prometheus / OpenMetrics exporter for GitLab CI pipelines insights
containers
Bioinformatics containers
igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
deepspeech-german
Automatic Speech Recognition (ASR) - German
apache-groovy-course
Apache Groovy Course
bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
SigProfilerExtractor
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
project-keyword-spotter
Audio Keyphrase Detector
neverwinter.nim
CLI tools and nim library used in Neverwinter Nights: Enhanced Edition development
bioregistry
📮 An integrative registry of biological databases, ontologies, and nomenclatures.
SigProfilerMatrixGenerator
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
test-datasets
Test data to be used for automated testing with the nf-core pipelines
buzzer_music
RPI Pico / Micropython library to play music through one or more buzzers, can automatically replace chords with fast arpeggios to simulate polyphony with a single buzzer. Music can be easily taken from onlinesequencer.net
spatialLIBD
Code for the spatialLIBD R/Bioconductor package and shiny app
genomation
R package for genomic feature analysis and visualization
nextflow_cheatsheet
Tips for Nextflow and cheatsheet for channel operation
NextflowSnippets
This repository hosts a large collection of Nextflow snippets
SigProfilerPlotting
SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.
workflow-template-nextflow
Template for building a small workflow in Nextflow