AntonPetrov

pgloader

Migrate to PostgreSQL in a single command!

higlass

Fast, flexible and extensible genome browser.

ChromosomeMappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

LiteMol

A library/plugin for handling 3D structural molecular data (not only) in the browser.

rna-tools

🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

Genomic-Interactive-Visualization-Engine

Genomic Interactive Visualization Engine

mikado

Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

FEELnc

FEELnc : FlExible Extraction of LncRNA

tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

go-annotation

This repository hosts the tracker for issues pertaining to GO annotations.

smallrnaseq

small rna-seq analysis package

traveler

Template-based RNA secondary structure visualization

fornac

A container for the forna visualization software.

GraphClust-2

A pipeline for structural clustering of RNA secondary structures

ribovore

patteRNA

Rapid mining of RNA structure motifs from profiling data.

CoordinateServer

A tool for querying databases of 3D molecular structures.

angularjs-humanize

AngularJS filters wrapping the 'humanize' library

agr_schemas

A repository of JSON schemas for incorporating data into the Alliance of Genome Resources.

jiffy-infernal-hmmer-scripts

Simple perl scripts for dealing with infernal and/or hmmer output/input.

DensityServer

A tool for querying 3D volumetric data.

EMG-docs

This repository contains the documentation for the EBI Metagenomics resource

rfam-tutorials

Learn how to annotate a genome with Rfam families using Infernal

rnacentral-data-schema

The JSON schemas for import into RNAcentral

RNAcentralTools

A set of tools useful for using RNAcentral in smallRNAseq analyses.

rfam-pubmed-id-highlighter

Chrome extension for identifying new literature for Rfam curation

epn-ofile

Perl module for output file handling

epn-options

Perl module for handling command line options, based on Sean Eddy's esl_getopts module from the Easel C library.

epn-test

Perl module for testing perl scripts or perl-based packages.

rfam-zwd-import

Code for importing ZWD into RNAcentral