AntonPetrov / fr3d-python

Python implementation of FR3D

FR3D

fr3d-python is an implementation of the FR3D software in Python.

Installation

With Docker

Clone the repository and navigate to the fr3d-python, then run:

docker build -t fr3d .
docker run -v `pwd`:/rna -it fr3d

Without Docker

1. Optional: create and activate a new virtual environment

2. Clone the repository and navigate to the fr3d-python, then run:

   python setup.py install
   

Usage

To annotate a cif file:

python fr3d/classifiers/NA_pairwise_interactions.py