Andrii Gegliuk's repositories
mouse-brain-atlas
Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo
Plant_Disease_CNN
Plant Disease Classification using Deep Learning
BEN_project
A generalized Brain Extraction Net for multimodal MRI data from rodents, nonhuman primates and humans
Machine-Learning-by-Andrew-Ng-in-Python
Documenting my python implementation of Andrew Ng's Machine Learning course
portfolio_flask_project
Personal Portfolio website Flask & JS
anriigegliuk
My personal Repository
atlasBREX
atlasBREX: Automated averaged template-derived brain extraction in animal MRI
awesome-machine-learning
A curated list of awesome Machine Learning frameworks, libraries and software.
brainreg-segment
Segmentation of 3D shapes in a common anatomical space
brkraw
BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data
bruker2nifti
Medical image format converter: from raw Bruker ParaVision to nifti.
DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
hiddenlayer
Neural network graphs and training metrics for PyTorch, Tensorflow, and Keras.
lecture_app
new_c
Mask_RCNN
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
mice_MRI_analysis
The central task involves applying affine transformations to align these brain images with a standard anatomical space, which is essential for subsequent comparison and analysis.
model_seg_mouse-sc_wm-gm_t1
White and grey matter segmentation on T1-weighted exvivo mouse spinal cord
Projects
:page_with_curl: A list of practical projects that anyone can solve in any programming language.
qsiprep
Preprocessing and reconstruction of diffusion MRI
segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
SegmentAnythingin3D
Segment Anything in 3D with NeRFs (NeurIPS 2023)