Beast code in Giters

Annefeng's starred repositories

pgs-calc

Applying polygenic scores (PGS) on imputed genotypes

Language:JavaMIT2500

fastqtl

Enhanced version of the FastQTL QTL mapper

Language:C++GPL-3.05500

EGEA

Every Gene Ever Annotated in published GWAS

4600

the National Precision Medicine (NPM) program represents a whole-of-government ten-year strategy to establish precision medicine as a peak of research excellence for Singapore. Phase I (2017-2021) was a "proof-of-concept" phase demonstrating the feasibility of large-scale genomic data generation with linkage to electronic health data. A headline deliverable of NPM Phase I was generating a genomic reference database of 10,000 healthy Singaporeans (SG10K_Health).

Language:Jupyter NotebookMIT100

YouTubeTutorials

Language:RMIT24700

analysis_pipeline

TOPMed analysis pipeline

Language:R5200

GenNet

Framework for Interpretable Neural Networks

Language:Jupyter NotebookApache-2.08800

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Language:PythonBSD-3-Clause315100

Fastq-to-vcf

Language:Python1300

UKB_RAP

Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

Language:Jupyter NotebookMIT11200