Angelos Galanopoulos's repositories
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Gene-Pleiotropy
Measuring gene pleiotropy through Gene Ontologies and Protein Interactions
Language:Jupyter Notebook000
ChIP-Seq-HOMER-analysis
A small script indicating data formatting and analysis in the HOMER software
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machine-learning-cancer-prediction
A script to predict cancer type based on gene expression values using a machine learning model
Language:Jupyter Notebook000
single-cell-RNAseq-data-analysis
A collection of R scripts on handling scRNAseq data
GATK-variant-calling
A workflow using GATK for variant calling
Language:Shell000
RNAseq-data-manipulation
Scripts on how to manipulate and visualize RNAseq data
Language:R000
Population-Genomics
An assignment I did on the Population Genomics module of my Masters
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Variant-calling-workflow
A variant calling workflow, starting from raw reads to variant identification
Language:Shell000
From-reads-to-counts
Example pipeline starting from fastq files (reads) and finally generating counts data
Language:Shell000
Ensembl-IDs-to-gene-symbols
Convert Ensembl IDs to gene symbols
Language:R000
R-methylation-workflow
A pipeline to analyze methylation array data
Language:R000