Copyright 2018
SBML Solver is high performance and portable simulation engine for systems and synthetic biology, which is a continuation of the original libRoadRunner project.
- Time Dependent Simulation (with optional conservation law reduction) using CVODE
- Supports SBML Level 2 to 3 but currently excludes algebraic rules and delay differential equations
- Uses latest libSBML distribution
- Defaults to LLVM code generation on the backend, resulting is very fast simulation times
- Optional generation of model C code and linking at run-time
- Add plugins, distribution comes with Levenberg-Marquardt optimizer plugin
- Compute steady state
- Metabolic Control Analysis
- Frequency Domain Analysis
- Access to:
- Eigenvalues and Eigenvectors
- Jacobian, full and reduced
- Structural Matrices of the stoichiometry matrix
SBML Solver is licensed for free as an open source programmatic library for use in other applications and as a standalone command line driven application. Its C++ API, C API, and Python APIs have comprehensive documentation. On Windows, OS X, and Linux binary files can be
downloaded from https://github.com/AndySomogyi/sbmlsolver ready for use.
This work is funded by NIGMS grant: GM081070
Licence
Licensed under the GNU Library General Public License (LGPL), Version 2.0 (the License); you may not use this file except in compliance with the License. You may obtain a copy of the License at
YOU CANNOT: redistribute any piece of this software without proper attribution;