Andrew York's repositories
publication_template
A template for writing scientific papers. View it in action here: https://andrewgyork.github.io/publication_template/
high_na_single_objective_lightsheet
Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/high_na_single_objective_lightsheet
simple_sim_fusion_demo
Simple demo of structured illumination microscopy image fusion via Richardson-Lucy deconvolution
remote_refocus
A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/remote_refocus/
adaptive_interference_inference
A mathematical optimization problem, inspired by an apparent paradox in the physics of optical measurement. Read the micro-publication here: https://andrewgyork.github.io/adaptive_interference_inference
relaxation_sensors
A scientific publication that describes a new approach for quantitative readout of fluorescent biosensors, based on spontaneous isomerization rates. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/relaxation_sensors
stimulated_emission_imaging
A scientific publication that describes experiments to explore whether stimulated emission from a pointlike emitter is distinguishable from the stimulating beam. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/stimulated_emission_imaging
iterative-fusion
Automatically exported from code.google.com/p/iterative-fusion
rescan_line_sted
A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/rescan_line_sted
tumbling_is_general
A scientific publication that describes new approaches to measuring protein-protein interactions via molecular tumbling. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/tumbling_is_general/
moire-sim-demo
Some brief blurbs about a structured illumination microscopy demo
split_wrmscarlet
A scientific publication that describes a new red fluorophore, along with a set of strains, reagents and protocols, to make it faster and easier to label endogenous C. elegans proteins with fluorescent tags. Read the publication here: https://andrewgyork.github.io/split_wrmscarlet
mScarlet_lifetime_reports_pH
A scientific publication describing the use of mScarlet fluorescence lifetime to quantify lysosomal pH.
publication_template_data
See https://andrewgyork.github.io/publication_template/ for details
remote_refocus_data
See https://andrewgyork.github.io/remote_refocus/ for details
rescan_line_sted_data
See https://andrewgyork.github.io/rescan_line_sted/ for details
tutorials
tutorials for the napari image viewer