Andrea Mariani's repositories
Unsupervised_clustering_eval
Some functions to evaluate Unsupervised Clustering for Single Cell RNAseq
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
BI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
ChIPseq_snakemake
ChIPseq pipeline for Pasini's lab written in snakemake
combinatorial_indexing
Collection of some functions for combinatorial indexing experiments
CutNtag_snakemake
CutNtag pipeline for Pasini's lab written in snakemake
hic
Analysis of Chromosome Conformation Capture data (Hi-C)
New_pc_setup
This repo contains links and a tutorial on how to set up a new machine with all the tools i need + customizations
RNAseq_snakemake
RNAseq pipeline for Pasini's lab written in snakemake
Denosing_ChIPseq
This repo contains different architectures for Denoising ChIPseq experiments
Kind-PyTorch-Tutorial
Kind PyTorch Tutorial for beginners
openproblems
Formalizing and benchmarking open problems in single-cell genomics
test_HPC_rnaseq
This repo contains a shorter version of an RNAseq pipeline. It'll be used to test HPC resources