AndrasHartmann

son-em

SON-EM - Algorithm for parameter estimation of hybrid time-varying parameter systems using Sum of Norms regularization and Expectation Maximization

MMCL

MATLAB implementation of the Markov CLustering (MCL) algorithm

cobratoolbox

COnstraint-Based Reconstruction and Analysis toolbox

gapreconst2

Reconstruction of Physiological time-series using Particle Swarm Optimization

OptPipe

a Pipeline for Optimizing Metabolic Engineering Targets, based on a consensus approach

balloonsim

balloon model simulation

biomed

Biomedical applications

filestore-sharelatex

An API for CRUD operations on binary files stored in S3

gapreconst

Reconstruction of Physiological time-series

gitprez

HIV-PSO

Identification of HIV-1 time series using Particle Swarm Optimization

HIVid

Identification of HIV time-series

matlab-sqlite3-driver

Matlab driver for SQLite3 database

Pathifier-Tool-Kit

Scripts that may help you use PATHIFIER (Drier et al., 2013)

pdfscrips

philentropy

Information Theory and Distance Quantification with R

RefBool

RefBool - a reference-based algorithm for booleanizing gene expression data

rgurobi

Solve optimisation problems using the commercial Gurobi software package

rtfractools

Real-time fractal analysing package

SBEToolbox

SBEToolbox (Systems Biology and Evolution Toolbox) is developed in MATLAB as a menu-driven UI software to determine various statistics of the biological network.