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BIAS Lab - Bioinformatics and Experimental Algorithms lab (AlgoLab)

BIAS Lab - Bioinformatics and Experimental Algorithms lab

AlgoLab

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Home Page:https://algolab.eu/

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BIAS Lab - Bioinformatics and Experimental Algorithms lab's repositories

galig

A graph aligner

Language:PythonLicense:GPL-3.0Stargazers:26Issues:8Issues:18

RecGraph

Optimal sequence-to-graph alignment with recombinations

Language:RustLicense:MITStargazers:24Issues:7Issues:7

shark

Mapping-free software for fishing relevant reads in an RNA-Seq sample

Language:C++License:GPL-3.0Stargazers:18Issues:4Issues:0

complexCGR

complex Chaos Game Representation for DNA sequences

Language:PythonLicense:MITStargazers:14Issues:3Issues:0

LightStringGraph

Lightweight String Graph Construction

Language:C++License:GPL-3.0Stargazers:11Issues:11Issues:1

malva

genotyping by Mapping-free ALternate-allele detection of known VAriants

Language:CLicense:GPL-3.0Stargazers:10Issues:8Issues:8

pangeblocks

pangenome from maximal blocks in an MSA

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:10Issues:4Issues:1

rs-vgaligner

Rust implementation of ekg's dozyg

Language:RustLicense:MITStargazers:9Issues:8Issues:0

pygfa

A library to manage GFA files

Language:PythonLicense:MITStargazers:7Issues:10Issues:3

pantas

Differential quantification of alternative splicing events on spliced pangenome graphs

Language:PythonStargazers:6Issues:7Issues:0

kfinger

A pipeline for computing overlaps between long reads based on theoretical properties of Lyndon factorizations.

Language:PythonStargazers:3Issues:6Issues:0

cancer_ea

cancer phylogeny genetic programming

Language:PythonStargazers:2Issues:10Issues:0

CouGaR-g

Frequence Chaos Game Representation of DNA with Deep Learning

Language:PythonLicense:GPL-3.0Stargazers:2Issues:3Issues:0

cpm2025

Combinatorial Pattern Matching 2025

Language:HTMLLicense:GPL-2.0Stargazers:2Issues:6Issues:0

ESGq

Language:PythonStargazers:2Issues:7Issues:0

MALVIRUS

A fast and accurate tool for genotyping haploid individuals (such as SARS-CoV-2)

Language:JavaScriptLicense:GPL-3.0Stargazers:2Issues:9Issues:17

deap

Distributed Evolutionary Algorithms in Python

Language:PythonLicense:LGPL-3.0Stargazers:1Issues:7Issues:0

meta_cancer

Language:Jupyter NotebookStargazers:1Issues:8Issues:0

supervised-dna

Language:Jupyter NotebookStargazers:1Issues:3Issues:0

persistent-phylogeny

Language:C++License:MITStargazers:0Issues:9Issues:0

celluloid

Celluloid: clustering single cell sequencing data around centroids

Language:PythonLicense:MITStargazers:0Issues:8Issues:0

COPA24

PhD school on Evolution in Computational Pangenomics

License:MITStargazers:0Issues:1Issues:0

MALVIRUS-data

Datasets accompanying MALVIRUS

Language:PythonStargazers:0Issues:9Issues:0

MALVIRUS-repro

Reproducibility of MALVIRUS experiments

Language:C++Stargazers:0Issues:8Issues:0

materiale-stage-tesi

Una raccolta di materiale utile per tutti gli studenti che iniziano a lavorare

Language:RustLicense:CC0-1.0Stargazers:0Issues:6Issues:0

pangeblocks-experiments

Experiments to evaluate graph constructions made with pangeblocks and other tools

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:0Issues:4Issues:0

Rearrangement-Distances

Rearrangement Distances journal paper

Language:TeXStargazers:0Issues:6Issues:0

RecGraph-exps

Language:PythonStargazers:0Issues:6Issues:0

rs-gax

Language:RustStargazers:0Issues:5Issues:0

Wild-pBWT

PBWT-based algorithm for identifying all Maximal Perfect Haplotype Blocks with Wildcards

Language:C++License:GPL-3.0Stargazers:0Issues:2Issues:0