Alfred Ssekagiri's repositories
super-infection
NGS-based HIV-1 super infection analysis
APDC
Metagenomics analysis
Bacterial_NGS
Bacterial pathogens , virulence factors and phage associated with undiagnosed AFI.
dailyRe-Data
daily SARS-CoV2 Re Values for select countries. See https://ibz-shiny.ethz.ch/covid-19-re/ for interactive visualisations.
Deep-Learning-Papers-Reading-Roadmap
Deep Learning papers reading roadmap for anyone who are eager to learn this amazing tech!
h3ameta
H3ABioNet Metagenomics Workflow
HIV_DeepLearning
HIV Drug Resistance Prediction with Deep Learning
hivseqdb-docker
Dockerized version of the HIVseqDB
MiCall-Lite
Pipeline for processing FASTQ data from an Illumina MiSeq for human RNA virus (HIV, hepatitis C virus) genotyping
MLandHIVDR
ML-based detection of HIVDR
myPhyloDB
myPhyloDB
warp
WDL Analysis Research Pipelines
wdl
Workflow Description Language - Specification and Implementations