AlfredUg

QuasiFlow

A Nextflow Pipeline for Analysis of NGS-based HIV Drug Resistance Data

super-infection

NGS-based HIV-1 super infection analysis

ACE

Seminar materials for BCBB ACE Workshops

adenoMetagenTraining

APDC

Metagenomics analysis

azure_nextflow

Bacterial_NGS

Bacterial pathogens , virulence factors and phage associated with undiagnosed AFI.

HIVseqDB

Webserver for storage [and analysis] of NGS-based HIVDR testing data

dailyRe-Data

daily SARS-CoV2 Re Values for select countries. See https://ibz-shiny.ethz.ch/covid-19-re/ for interactive visualisations.

Deep-Learning-Papers-Reading-Roadmap

Deep Learning papers reading roadmap for anyone who are eager to learn this amazing tech!

DeepPINK

DeepPINK: reproducible feature selection in deep neural networks

dropout-feature-ranking

DTU

GUI

Basic graphical user interface in java (part 1)

h3ameta

H3ABioNet Metagenomics Workflow

HIV_DeepLearning

HIV Drug Resistance Prediction with Deep Learning

hivseqdb-docker

Dockerized version of the HIVseqDB

iva

de novo virus assembler of Illumina paired reads

metagenomics-workshop

MiCall-Lite

Pipeline for processing FASTQ data from an Illumina MiSeq for human RNA virus (HIV, hepatitis C virus) genotyping

MLandHIVDR

ML-based detection of HIVDR

MNGS

Shotgun metagenome assembly and gene prediction

myPhyloDB

myPhyloDB

Nano-QuasiFlow

ngs_hivdb

oneliners

Useful bash one-liners for bioinformatics.

PathogenGenomics2023

RNAseq

warp

WDL Analysis Research Pipelines

wdl

Workflow Description Language - Specification and Implementations