Alexander Senf's repositories
ga4gh_compute_trial
A trial setting up a compute system comprised of GA4GH WES, TES, DRS, TRS services.
pipelines_intro
A basic look at CWL
crypt4gh
GA4GH cryptographic tools
crypt4gh-1
Crypt4GH standard implementation
crypt4gh_development
Spec Development/Experimental version of Crypt4GH
cwl_nextflow_examples
Examples of pipelines written in CWL and Nextflow
cwltool
Common Workflow Language reference implementation
demo-workflows
Demo workflows for ELIXIR Cloud & AAI stack
htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
htsjdk_crypt4gh_test
Just a test for the htsjdk with the added SeekableCrypt4GHStream
OpenID-Connect-Java-Spring-Server
An OpenID Connect reference implementation in Java on the Spring platform.
orgaquant
Just a test. Implementing the Orgaquant pipeline
pcapAnalyzer
Basic Java Packet analyzer
practice
temporary repo to test a few things
proTES
Proxy service for injecting middleware into TES requests
proWES
Proxy service for injecting middleware into WES requests
ReadDecisionServer
A short read matching server with a mask
servertest
A load test tool for the ShortReadServer
ShortReadMaskedMatchServer
Align a short read against an indexed reference genome and process alignment positions against a mask
StoryGAN
StoryGAN: A Sequential Conditional GAN for Story Visualization
ucla_data_processing
An example for data processing
UKBC_live_gui
Live GUI example components