AlexCoul's repositories

BioImViz

Visualize and annotate bio-images.

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alexcoul.github.io

A beautiful, simple, clean, and responsive Jekyll theme for academics

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BIRSBIO2020.seqFISH.neighbors_aggregation

My analyses for the seqFISH challenge for the BIRS Biointegration workshop.

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cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

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CZI_single_cell_biology_annual_meeting

More info about the poster presented at this event.

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deeds-registration

Python wrapper around DEEDS - efficient algorithm for 3D discrete deformable image registration, reaching the highest accuracy in several benchmarks

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mosna

mosna stands for multi-omics spatial network analysis

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napari-image-stacker

A little napari plugin to convert multiple open images to a stack and vice versa

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napari-spot-detection

Detect spots in 3D images

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whitePaper

Manubot for white paper

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