AlesMaver's repositories
AF_estimate_pyvcf
This python script takes a vcf file and calculates allele frequencies using genotype likelihoods for a subset of individuals at specific loci using the method of Kim et al. BMC Bioinformatics 2011
bioWDL_RNAseq
A collection of BioWDL workflows for aligning sequencing data.
bravo
BRowse All Variants Online
bravo-pipeline
Data preparation pipeline for BRAVO
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
cromwell-tools
A collection of Python clients and accessory scripts for interacting with the Cromwell
delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
docker-annotsv-cwl
Docker container for running AnnotSV
ExpansionHunter
A tool for estimating repeat sizes
fpdf2
Simple PDF generation for Python
gatk
Official code repository for GATK versions 4 and up
igv.js-flask
Example project for integrating igv.js and flask
pdfrw
pdfrw fork to store the add page at index fix
scramble
Forking the default scramble directory
structural-variantcalling
A workflow for calling structural variants. Category:Single-Sample