AlbertoBejarano

bioinformatics

Course materials for Computational Biology and Bioinformatics - BI462

dimr_spectrum_single_cell

View a spectrum of dimensionality reduction embeddings for your single-cell data ranging from t-SNE like to UMAP like

contrastive-ne

Contrastive neighbor embeddings

single-cell-best-practices

https://www.sc-best-practices.org

scRNA-seq_online

built-iab

Repository for An Introduction to Applied Bioinformatics built notebooks.

workshop-advanced-python

Workshop on advanced python lead by Sergio Netotea

workshop-scRNAseq

Single cell RNA sequencing analysis course

BioBombe

BioBombe: Sequentially compressed gene expression features enhances biological signatures

appyter-catalog

A catalog of appyter notebooks

gdc-docs

Official repository for GDC User Guides in Markdown format

regtools

Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

CancerLandscapesPreprocessing

This is a repository containing a single jupyter notebook that preprocesses TCGA data for use by gpmap tool from David McCandlish's lab

tcga

This notebook will access TCGA, preprocess those data, and perform common analyses.

examples-Python

Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.

rnaseq-notebooks

Jupyter Notebooks for RNA-seq TCGA/GTEx Cancer Study

GTExTissueNotebooks

Visualization and analysis of RNA-seq data from GTEx v8 in Jupyter Notebooks

pgatk

PGATK: ProteoGenomics Analysis ToolKit

GDCDataRetrival

a sample program to retrieve data from NCI's GDC data protal

CodonOptimizationNotebook

codon_tools

A python package containing various tools for codon optimization and de-optimization.

milos-agathon

towards-data-science-articles

machine-learning

Practical Full-Stack Machine Learning

kaggle-solutions

🏅 Collection of Kaggle Solutions and Ideas 🏅

Daily-Dose-of-Data-Science

A collection of code snippets from the publication Daily Dose of Data Science on Substack: http://www.dailydoseofds.com/

project-walkthroughs

Data science, machine learning, and web development project code for https://www.youtube.com/c/Dataquestio .

notebooks

credit-card-fraud-detection-a-hands-on-project

data-science-cheat-sheets

A collection of Data Science cheat sheets.