Jonatan Gonzalez Rodriguez's repositories
NeoPred-NF
Nextflow implementation of Neoantigen prediction with HLA-typing grouping matched normal-tumor WGS/WES and tumor RNA-seq
atacseq
ATAC-seq peak-calling, QC and differential analysis pipeline
awesome-compbio-chatgpt
An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology
biotools
A list of useful bioinformatics resources
cdot
Transcript versions for HGVS libraries
DiabPred
Type 2 diabetes prediction based on genomic data with deep learning algorithms
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
hla_pipeline
DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions
Micropep
Pipeline to identify putative micropeptides from alignment BAM files.
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
SLA
Skin Lesion Analyser
pMTnet
Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
pure-sh-bible
đź“– A collection of pure POSIX sh alternatives to external processes.
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
SVDB
structural variant database software
toyplot
Interactive plotting for Python.