Ahmed Adel Aboushanab's repositories
COVID-19
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
My-Python-Works
My Python projects
systems-genomics-lab.github.io
Homepage of the Systems Genomics Lab at AUC
Masters
This repository contains the datasets, metadata, and codes for the study
deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
From-sra-to-Fastq
from sra to Fastq
q2-feature-classifier
QIIME 2 plugin supporting taxonomic classification
curatedMetagenomicData
Curated and processed metagenomic data through ExperimentHub
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
genomes-pipeline
MGnify genome analysis pipeline
sra-tools
SRA Tools
STAR
RNA-seq aligner
Xpresso
Predicting gene expression levels from genomic sequences
OT-2_APIv2_Workshop
Beginner's materials for learning OT-2 APIv2
Topcuoglu_ML_mBio_2020
Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data
covid_balf
R script for the covid balf data analysis
ncov
nCoV project
ensembl-rest
Language agnostic RESTful data access to Ensembl data over HTTP
prediction_confidence_intervals_demo
A shiny app demonstrating the differences between confidence intervals and prediction intervals
bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
Run_Analysis
Getting and Cleaning Data final project
TASBEFlowAnalytics-Tutorial
Tutorial for how to use TASBEFlowAnalytics software
TASBEFlowAnalytics
Flow cytometry unit conversion and analytics
ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera