Aelita-Stone

GBM360

Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications

copymanga

拷贝漫画的第三方APP，优化阅读/下载体验

cell2location

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

epiAneufinder

R package to detect breakpoints and assign somies to scATAC-seq data

HE2RNA_code

Train a model to predict gene expression from histology slides.

stainlib

Python 3 library for the augmentation & normalization of H&E images

HistoMIL

A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.

color_transfer

Performs color transfer between two images. Loosely based on the "Color Transfer between Images" paper by Reinhard et al., 2001.

StainTools

Tools for tissue image stain normalisation and augmentation in Python 3

OpenAI-CLIP

Simple implementation of OpenAI CLIP model in PyTorch.

nucleotide-transformer

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

DNABERT

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

VLM_survey

Collection of AWESOME vision-language models for vision tasks

awesome-multimodal-ml

Reading list for research topics in multimodal machine learning

Awesome-Multimodal-Research

A curated list of Multimodal Related Research.

LeetCode-Py

⛽️「算法通关手册」：超详细的「算法与数据结构」基础讲解教程，从零基础开始学习算法知识，850+ 道「LeetCode 题目」详细解析，200 道「大厂面试热门题目」。

mit-deep-learning-book-pdf

MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville

liger

R package for integrating and analyzing multiple single-cell datasets

cursor

The AI Code Editor

SpaGCN

SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network

SPOTlight

Spatial Transcriptomics Capture Location Deconvolution

MoCov2_Pytorch_tutorial

MoCo v2 Pytorch tutorial, https://arxiv.org/abs/2003.04297

SPOTlight_deconvolution_analysis

spacexr

Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

DeepSpaCE

intro-to-deepcell

An introduction to deepcell and deep learning

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

STARCH

Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity

copy-number-analysis

Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis

synthwave-vscode

Synthwave inspired colour theme for VS Code 🌅🕶