Abdul Saboor Khan's repositories
Circle-Map
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
ComplexHeatmap
Make Complex Heatmaps
lncRNA-screen
lncRNA-screen
lncScore-Java
Prediction of lncRNA from RNA-Seq data
tensorflow
An Open Source Machine Learning Framework for Everyone
abd-rstudio
RStudio is an integrated development environment (IDE) for R
BRAKER
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes
EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
Helixer
Using Deep Learning to predict gene annotations
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
BRAKER-TSEBRA-Workshop
This repository contains course materials for a workshop on structural genome annotation with BRAKER and TSEBRA
esquisse
RStudio add-in to make plots with ggplot2
gwas_gemma
Perform GWAS with gemma in a simple pipeline
minichain
Long-read aligner to pangenome graphs
OpenMx
Repository for the OpenMx Structural Equation Modeling package
polotno-studio
Free online Design Editor.
rnaseq-nf
A proof of concept of RNAseq pipeline
sars2app
thinned out for tsapp only
shinyCircos
an R/shiny application for creation of Circos plot interactively
STAR-Fusion
STAR-Fusion codebase