AST87

CellBender

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

spacemake

scbs

Python package with CLI for downstream analysis of single cell methylation data.

wgbs_tools

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

CellProfiler

An open-source application for biological image analysis

awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

core

Core classes and components used by CellProfiler

souporcell

Clustering scRNAseq by genotypes

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Epiclomal

Epiclomal package, software for clustering of sparse DNA methylation data

stat_rethinking_2022

Statistical Rethinking course winter 2022

meth_atlas

MGcount

MGcount github repository

meffil

Efficient algorithms for analyzing DNA methylation data.

methylpy

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

NetSeekR

A networks analysis pipeline for RNASeq time series data

godmc

GoDMC analysis pipeline

melodi

Mining Enriched Literature Objects to Derive Intermediates

StemID

Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.

EMPHASIS