ANaka

pykan

Kolmogorov Arnold Networks

SWE-agent

SWE-agent takes a GitHub issue and tries to automatically fix it, using GPT-4, or your LM of choice. It solves 12.47% of bugs in the SWE-bench evaluation set and takes just 1 minute to run.

HEBO

Bayesian optimisation & Reinforcement Learning library developped by Huawei Noah's Ark Lab

penzai

A JAX research toolkit for building, editing, and visualizing neural networks.

HTML5_Genetic_Cars

A genetic algorithm car evolver in HTML5 canvas.

awesome-protein-representation-learning

Awesome Protein Representation Learning

bio_embeddings

Get protein embeddings from protein sequences

Jaiqu

Automatically reformat any JSON into any schema with AI

awesome-AI-based-protein-design

A collection of research papers for AI-based protein design

dessins_geometriques_et_artistiques

Recode of book "Dessins géométriques et artistiques avec votre micro-ordinateur" (1985) with p5js

FoldFlow

FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation

Awesome-Biomolecule-Language-Cross-Modeling

Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey"

MLDE

A machine-learning package for navigating combinatorial protein fitness landscapes.

heme_binder_diffusion

InstructPLM

The first large protein language model trained follows structure instructions.

esm-variants

FrameDiPT

FrameDiPT: an SE(3) diffusion model for protein structure inpainting

TaxDiff

The official code for "TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation"

protein_gibbs_sampler

Gibbs sampling for generating protein sequences

pLM-BLAST

Detection of remote homology by comparison of protein language model representations

protkit

A Unified Approach to Protein Engineering

metl

Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models

LatentDE

Latent-based Directed Evolution guided by Gradient Ascent for Protein Design

SOBER

Fast Bayesian optimization, quadrature, inference over arbitrary domain with GPU parallel acceleration

Codon-Optimization

A neural based approach to the task of genetic codon optimization

metl-pretrained

Pretrained METL models with minimal dependencies

ESTAG

The source code of "Equivariant Spatio-Temporal Attentive Graph Networks to Simulate Physical Dynamics"

esmologs

Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.

GDFold2

InteractionRecovery