Beast code in Giters

ANGSD's repositories

angsd

Program for analysing NGS data.

Language:C++224 21 569

NgsRelate

Language:C++GPL-2.040 5 50

ngsPSMC

Language:C++GPL-3.07 5 24

newick

Small code for parsing annoying newick trees recursively

Language:CGPL-2.05 20

tmon

Language:CGPL-2.04 3 1

maf2fasta

Program to generate fasta from maf files (multiple alignment files)

Language:C++2 20

adv_binf_2023_week1

Teaching material used in the "Advanced Bioinformatics for Next-Generation Sequencing" class, University of Copenhagen, 2023

Language:HTML100

asaMap

rbinom

Language:C++1 40

ngsRelate_HMM

Language:C++1 20

refFinder

Program/lib to extract bases from positions in fastafiles

Language:CGPL-3.01 20

decluster

Language:C++GPL-3.001 5

a2a

anything to anything

020

abbababa2000

Language:C++010

ANGSD.github.io

The Unix Shell

Language:HTMLNOASSERTION010

bam2prof

the subprogram in schmutzi but rewritten using htslib

Language:C++010

bimtool

Language:C++020

bioconda-recipes

Conda recipes for the bioconda channel.

Language:ShellMIT000

compQscore

Little program to count qscore vs qscore

Language:R020

emAccel

Language:C020

fasta_splitter_triage

Language:C++020

getliners

Language:C++020

metabeta

Language:C++020

metaDMG-cpp

Language:C++05 22

misc

Small usefull program (not finished and not user friendly for other than me)

Language:C020

mpileupreader

Language:C++010

read_overlap

Language:C++010

smallBam

33 small BAMs from CEU population, used for testing correctness of angsd

020

splitbam

Program to split a bam such that a read does not span multiple reads. Assumes

Language:C++GPL-3.0020

squeezer

Language:C++010

trimfastq

Language:C++020