Software for AFM & SPM data analysis

TopoStats

An AFM image analysis program to batch process data and obtain statistics from images

AFMReader

A library for loading various atomic force microscopy file formats.

topofileformats

Legacy package for topofileformats (now renamed to AFMReader)

afm-software-list

Management of our curated AFM software list

curves

A toy repository to test out measuring curvature

gwyddion-python

A dockerised Gwyddion with functioning Python support based on Linux.

home

A place for information and discussions.

jupyterlite-topostats

Run TopoStats Notebooks directly in your browser.

pyDAMPF

pyDAMPF: a Python package for modeling mechanical properties of hygroscopic materials under interaction with a nanoprobe

AFM_Youngs_modulus_fit

matlab coding for AFM raw data post-processing > Hertz model to obtain cell Young's modulus

afmformats

Python library for reading common AFM file formats

hyperspy-eg

HyperSpy showing an AFM image in a Jupyter notebook on myBinder / colab.

image-analysis

PyJibe

GUI for AFM data analysis with an emphasis on biological specimens

pySPM

Python library to handle Scanning Probe Microscopy Images. Can read nanoscan .xml data, Bruker AFM images, Nanonis SXM files as well as iontof images(ITA, ITM and ITS).

pyspm-gwyddion

Notes on using pySPM functions in tyopostats, in place of those from Gwyddion

spym

A python package for processing Scanning Probe Microscopy (SPM) data.

TriplatinNC

A repository for the code for processing the TriplatinNC AFM data.

topo-libasd

A fork of @toruniina 's repo for C++11/Python3 library to read/write High Speed AFM data file. This is just to get wheels working.

topostats-training

TopoStats Training Material