Adriane Esquivel Muelbert - School of Geography, Earth and Environmental Sciences, University of Birmingham, UK. a.esquivelmuelbert@bham.ac.uk
Codes from the analyses on spatial patterns of tree mortality across Amazonian forests published in the article Esquivel-Muelbert et al. (2020) Tree mode of death and mortality risk factors across Amazon forests. Nature Communications 10.1038/s41467-020-18996-3
Code developed and tested using the R statistical platform R v 3.5.2 (R Development Core Team, 2015).
Describes the analyses shown in the paper including plot-level analyses and the survival analyses (tree-level)
Codes for Figures 1, 2 and 3 are provided here
Functions used to perform plot-level analyses and plot Figures 1 and 2
Functions used to perform survival analyses and plot Figure 3
Data are available at: http://www.forestplots.net/en/publications#data
Plot code
Stem mortality rates (% y-1)
plot location (latitude and longitude in decimal degrees)
region
Plot code
m.rates.likstanding - Stem mortality rates (% y-1) for trees that died standing
m.rates.notstanding - Stem mortality rates (% y-1) for trees that died broken/uprooted
p.MoD.likstanding - proportion of dead trees that died standing
p.MoD.notstanding - proportion of dead trees that died broken/uprooted
census interval lenght (y)
region
plot code
region
dead (0/1)
interval (i.e. interval during which tree was monitored in years)
D (mm, diameter before the last observation)
DrelGR(mm, relative growth prior last observation)
MaxD(mm, maximum diameter for the species)
MeangrD (mm, mean growth rate for the species)
WD (g cm-3, species-level wood density)
WDA (mm, species-level water-defici affiliation)